Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    24   1.00 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.3  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
          protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 87 CFRRSRARYEDEEGTFKP 34
          CF  S A Y + EG+FKP
Sbjct: 28 CFFASWAGYRNGEGSFKP 45


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 123 PPVPFNDPIKENCFRRSRARYEDEEGTFKP 34
           PP    DP KE  +    A Y D    FKP
Sbjct: 328 PPCGQLDPTKEKLYDAIEALYGDMLKQFKP 357


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 RAGWNGLIISLYKY 158
           RAGWN L+I+ + +
Sbjct: 248 RAGWNELLIAAFSH 261


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 565 DEINENIGALQTPQSPKSRPGYSHAH 488
           D + EN+  +   +   S  G+SHAH
Sbjct: 340 DGLGENMMDMSLTRHQISSMGHSHAH 365


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 565 DEINENIGALQTPQSPKSRPGYSHAH 488
           D + EN+  +   +   S  G+SHAH
Sbjct: 340 DGLGENMMDMSLTRHQISSMGHSHAH 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,330
Number of Sequences: 336
Number of extensions: 3697
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)