Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.5  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   3.3  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   5.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   7.6  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 275 SLVYSVTIVLFPPW-RSWRPSVASNEEDVGSSVAQFTHMGIF 153
           SLV  +  +  PP  R W P  A+  E+ G   ++FT+  IF
Sbjct: 142 SLVCLLAEIYVPPANRVWYPDDAAELEETGLRPSRFTYANIF 183


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 670 PEYVRGEC---HNYIRVVAWTSTLS*LLDFIQGSR*FWDE-INE 551
           PEY+  E    H Y +VV W +    L + I G   F+DE INE
Sbjct: 392 PEYLAPELLLGHGYTKVVDWWTLGVLLYEMITGLPPFYDENINE 435


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   HKNIHLHRMFGLKVPSSSSYLARDRRKQFSFIGSLK 112
           H+NI  +      +PS  +YL    R QF F+G LK
Sbjct: 73  HENIRFY-----PIPSLPAYLQPKNRLQFLFLGPLK 103


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 676 NPPEYVRGECHNYIRVVAWTST 611
           N P Y    C+N+IR ++W+S+
Sbjct: 298 NLPAYDLNFCNNFIRKLSWSSS 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,069
Number of Sequences: 5004
Number of extensions: 62724
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)