Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    30   2.0  
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428...    29   2.6  
02_05_1138 + 34379697-34380902                                         29   2.6  
08_01_0432 + 3782594-3783027,3783678-3783759,3784067-3784117,378...    29   3.4  
12_02_0686 - 22076741-22077085                                         29   4.5  
03_06_0073 + 31474832-31475284                                         28   7.9  

>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  VPSSSSYLARDRRKQFSFIGSLKGTGGMEWSH 139
           +P  S Y       Q++F G+  GT GMEW++
Sbjct: 479 IPGFSLYRGLYELGQYAFSGNAMGTNGMEWTN 510


>04_04_0481 -
           25541355-25541849,25541933-25542535,25542730-25542837,
           25542925-25543260,25543391-25543461,25543692-25543824
          Length = 581

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 245 FPPWRSWRPSVASNEEDVGSSV 180
           + PW+ +RP V+S   D+G SV
Sbjct: 559 YKPWKRYRPDVSSKGRDIGLSV 580


>02_05_1138 + 34379697-34380902
          Length = 401

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 287 SKIHSLVYSVTIVLFPPWRSWRPSVASNEEDVGS 186
           S +HS   S    L PPWRS++P++  +  + GS
Sbjct: 356 SLVHSFDTSANPGLMPPWRSFQPTMDQDGVEDGS 389


>08_01_0432 +
           3782594-3783027,3783678-3783759,3784067-3784117,
           3784279-3784514,3785008-3785058,3790905-3791106,
           3791695-3791977,3792617-3792687
          Length = 469

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/90 (27%), Positives = 36/90 (40%)
 Frame = +2

Query: 38  LKVPSSSSYLARDRRKQFSFIGSLKGTGGMEWSHYLIIQISPCA*IVQPMNLRLPHSMPR 217
           L++  S SYL  D   +  ++GSL   GG +  H  +  + P      P    LP  +  
Sbjct: 25  LRIWKSGSYLHADEDGRSVYVGSLPRDGGGDSRHCAVWAVEPPIDAAAP----LPQYVRL 80

Query: 218 TGATNATEGTKRSLRSKQGYVSSXIAITDR 307
            GA     G   S  S   ++S   A  DR
Sbjct: 81  RGAYGRYLGAPDSYGSPLPFLSVDAAQRDR 110


>12_02_0686 - 22076741-22077085
          Length = 114

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 123 PPVPFNDPIK-ENCFRRSRARYEDEEGTFKPNI 28
           PPVP+   ++ EN  RR R   E EEG+  P +
Sbjct: 29  PPVPYGARLRRENPIRRPRKPAEPEEGSSLPGV 61


>03_06_0073 + 31474832-31475284
          Length = 150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 94  LYRIIKRNGRDGM-VSLSHYTNIPMCVNCATDEPTSSSFDATDGRHERHGGNKTIVTE*T 270
           +YR IK   R+GM ++L+   N+P  + C  DEP   +    D   E        +    
Sbjct: 50  VYRCIKV--REGMFLTLATEYNMPALIGCPGDEPRMLTPYVDDDEDEDDATESPTLARGI 107

Query: 271 RLCIFEXCYYR 303
            +C    C +R
Sbjct: 108 TVCFARTCRWR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,980
Number of Sequences: 37544
Number of extensions: 399170
Number of successful extensions: 854
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)