Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001586-1|AAH01586.1|  326|Homo sapiens F-box and leucine-rich ...    31   5.0  
AK027004-1|BAB15622.1|  273|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AK000195-1|BAA91002.1|  326|Homo sapiens protein ( Homo sapiens ...    31   5.0  

>BC001586-1|AAH01586.1|  326|Homo sapiens F-box and leucine-rich
           repeat protein 12 protein.
          Length = 326

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 214 WHRMRKT*VHRLHNLRTWGYLYNEIMRP 131
           WH +R+    RLH+LR  GYL++    P
Sbjct: 60  WHLLRRYMASRLHSLRMGGYLFSGSQAP 87


>AK027004-1|BAB15622.1|  273|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23351 fis, clone HEP14009. ).
          Length = 273

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 214 WHRMRKT*VHRLHNLRTWGYLYNEIMRP 131
           WH +R+    RLH+LR  GYL++    P
Sbjct: 7   WHLLRRYMASRLHSLRMGGYLFSGSQAP 34


>AK000195-1|BAA91002.1|  326|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20188 fis, clone COLF0561. ).
          Length = 326

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 214 WHRMRKT*VHRLHNLRTWGYLYNEIMRP 131
           WH +R+    RLH+LR  GYL++    P
Sbjct: 60  WHLLRRYMASRLHSLRMGGYLFSGSQAP 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,430,505
Number of Sequences: 237096
Number of extensions: 2210159
Number of successful extensions: 7477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7477
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)