Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0131
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.29 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.29 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  NVWFEGAFLVLVSGAGSSEAILLYRIIK 111
           N +F+GAF  ++ G G +  ++LY  IK
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVLYDEIK 297


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  NVWFEGAFLVLVSGAGSSEAILLYRIIK 111
           N +F+GAF  ++ G G +  ++LY  IK
Sbjct: 270 NAFFKGAFSNILRGTGGALVLVLYDEIK 297


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 176 VQPMNLRLPHSMPRTGATNATEGTKRSLRSKQGYVSS 286
           +QP +  L  ++  +G  + + G + SLR+ +  +SS
Sbjct: 21  IQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISS 57


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 RAGWNGLIISLYKY 158
           RAGWN L+I+ + +
Sbjct: 268 RAGWNELLIASFSH 281


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 RAGWNGLIISLYKY 158
           RAGWN L+I+ + +
Sbjct: 268 RAGWNELLIASFSH 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,097
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)