Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    69   9e-11
UniRef50_Q8YC89 Cluster: 3-OXOADIPATE COA-TRANSFERASE SUBUNIT A;...    33   7.6  
UniRef50_A6LG69 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 68.9 bits (161), Expect = 9e-11
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = +1

Query: 271 TRWTDDLVRTAGSRWMQVATDRPHWRSLGEAYVQQWT 381
           TRWTDDLV+ AGS WMQ A DR  W+SLGEA+VQQWT
Sbjct: 458 TRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWT 494


>UniRef50_Q8YC89 Cluster: 3-OXOADIPATE COA-TRANSFERASE SUBUNIT A;
           n=1; Brucella melitensis|Rep: 3-OXOADIPATE
           COA-TRANSFERASE SUBUNIT A - Brucella melitensis
          Length = 176

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 288 PGKNRWVTLDAGGNGPAALEITWRGLCSAVDNGQAEMMMM 407
           P K+RW+  + GG+ P A    WRGL +    G+ E M M
Sbjct: 13  PVKSRWI--NRGGSRPPARTKAWRGLWAFSRRGEVEEMFM 50


>UniRef50_A6LG69 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides distasonis ATCC 8503|Rep: Putative
           uncharacterized protein - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 188

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 154 MVFFFWSGGSRWTFSLLCGWLAGYV 80
           ++  FW+   RWTF   C WLA +V
Sbjct: 12  IILLFWARPERWTFKSFCLWLATWV 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,019,005
Number of Sequences: 1657284
Number of extensions: 12578092
Number of successful extensions: 31068
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31063
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)