Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    24   0.92 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.5  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 222 HGIEASLPAQWKFMDIFLEEVSTWFFF 142
           H I       W F+D+F+   ST F F
Sbjct: 92  HAITIRSTFSWTFIDVFIMLTSTAFVF 118


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 550 AIVNG*NERTLYHKIYDLLMRKYSHWRTH---WNCHILHH 440
           AI N   +R   + IY+ +MR + ++R +   W   I H+
Sbjct: 95  AIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHN 134


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 170 LKKSAHGFFFLVRRKSLDFLSSLRM 96
           L+K  H   +L RR+ ++   SLR+
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLRL 222


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 170 LKKSAHGFFFLVRRKSLDFLSSLRM 96
           L+K  H   +L RR+ ++   SLR+
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLRL 222


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 170 LKKSAHGFFFLVRRKSLDFLSSLRM 96
           L+K  H   +L RR+ ++   SLR+
Sbjct: 198 LEKEFHFNKYLTRRRRIEIAESLRL 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,509
Number of Sequences: 336
Number of extensions: 3039
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)