Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    28   0.98 
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    28   0.98 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   1.7  

>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 89  RQPSAE--KRESPATSS*PKKKNHVLTSSRKISIN 187
           ++PSAE  + ESP   + P K  H+ TS RK S+N
Sbjct: 30  QEPSAEGVEEESPNVQASPPK-THIYTSPRKRSVN 63


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 57  GGLVSLTLTYPASHPQRREKVQRLPP 134
           GGL  LT+ +P  +P R  K +  PP
Sbjct: 55  GGLYKLTMAFPEEYPTRPPKCRFTPP 80


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  GLVSLTLTYPASHPQRREKVQRLP 131
           G++  TLT+PA   +RR +V R+P
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNRIP 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,198
Number of Sequences: 5004
Number of extensions: 50311
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)