Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0040 + 27243195-27243428,27243665-27243736,27243837-272439...    31   1.0  
03_05_0799 + 27809301-27811550                                         29   4.1  
01_05_0473 - 22549178-22549532,22549612-22550576                       29   4.1  
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156...    29   4.1  
01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536...    28   5.4  
10_06_0180 + 11526139-11526172,11526365-11527218                       28   7.1  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    27   9.4  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    27   9.4  
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939...    27   9.4  

>05_07_0040 +
           27243195-27243428,27243665-27243736,27243837-27243904,
           27243987-27244113,27244514-27244669
          Length = 218

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 135 DQKKKTMC*LLQERYP*TSTAPAKMLQYHGRTFYF 239
           D+K  T+C +  ++Y    TAPAK+ Q HGR   F
Sbjct: 90  DEKGDTICEICLQQYTPNYTAPAKLFQ-HGRNSIF 123


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 80  DIPRQPSAEKRESPATSS*PKKKNHVLTSS--RKISINFHCAGKDASIPWSNILFL 241
           D+PR  ++EK+E P   S P  KN +  S   R  S       +  S  W+   F+
Sbjct: 236 DLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFV 291


>01_05_0473 - 22549178-22549532,22549612-22550576
          Length = 439

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 351 TWRGLCSAVDNGQAEMMMM 407
           TWRG CS++ NG ++M+++
Sbjct: 246 TWRGFCSSIANGCSKMIVI 264


>01_05_0410 +
           21914995-21915168,21915268-21915353,21915446-21915656,
           21915869-21915998,21916740-21916924,21917014-21917145,
           21917329-21917433
          Length = 340

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 6   PDELYHMRGLDVGC*ATGGLVSLTLTYPASHPQRREKVQRLPP 134
           P++      L + C A  GL   TLTYP    +R+ +VQ   P
Sbjct: 226 PEDYKRSVVLKLSCGALAGLFGQTLTYPLDVVRRQMQVQNKQP 268


>01_06_0447 +
           29452194-29452361,29453232-29453317,29453403-29453610,
           29454252-29454381,29454561-29454745,29454858-29454989,
           29455747-29455851
          Length = 337

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   PDELYHMRGLDVGC*ATGGLVSLTLTYPASHPQRREKVQ 122
           P++  +   L + C A  GL   TLTYP    +R+ +VQ
Sbjct: 223 PEDYKNSVTLKLSCGAAAGLFGQTLTYPLDVVRRQMQVQ 261


>10_06_0180 + 11526139-11526172,11526365-11527218
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 147 FFFGQEEVAGLSLFSADGW 91
           FF G E   GLS + A+GW
Sbjct: 277 FFAGDEHAGGLSWYGAEGW 295


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 272 RDGPTTW*EPLGHVGC 319
           ++G T W +P+GHVGC
Sbjct: 320 QNGFTVWQKPVGHVGC 335


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 315 DAGGNGPAALEITWRGLCSA 374
           DAGG G  A E+  RGLC A
Sbjct: 365 DAGGGGGTATELRRRGLCVA 384


>01_06_1818 -
           40093327-40093384,40093501-40093580,40093661-40093946,
           40095007-40095291,40095386-40095513,40095625-40096560,
           40096650-40096712,40096801-40096854,40096963-40097139,
           40097452-40097583,40097666-40097785,40097935-40098627,
           40098760-40099158,40099263-40099271
          Length = 1139

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 511 KIYDLLMRKYSHWRTHWNCHILH 443
           K+Y +L+R Y+ + THW CH ++
Sbjct: 76  KLYIVLIRSYTAYFTHW-CHSVY 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,357
Number of Sequences: 37544
Number of extensions: 374452
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)