Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_43198| Best HMM Match : KIX (HMM E-Value=1.4)                       29   2.4  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)            29   4.2  
SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)                   27   9.7  
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 95   PSAEKRESPATSS*PKKKNHVLTSSRKISINFH 193
            PSA++R SP TS    + +   +SSR++++N H
Sbjct: 1182 PSAQQRASPTTSDEEPETSQKASSSRQMTLNSH 1214


>SB_43198| Best HMM Match : KIX (HMM E-Value=1.4)
          Length = 209

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
 Frame = -3

Query: 532 NERTLYHKIYDL------LMRKYSHWRTHWNCH 452
           NE T   +I D+      + R+Y HW  HWN H
Sbjct: 177 NEETCIEEIEDITNANITVTRQYYHWTVHWNRH 209


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 178 IHKLPLRRQRCFNTMVEHFIFNLLFYML-----SAVTRWTDDLVRTAGSRWMQVATD 333
           I + PL+  +    + EHFI   L  ++     +   RW D+ +R+A   W++V  D
Sbjct: 257 ISRAPLKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLKVPKD 313


>SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)
          Length = 552

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -2

Query: 299 VLTRSSVHLVTADNI*NNKLKIKCSTMVLKHLCRRSGSL 183
           VLT + +H +  DN  +++  +K  T+V+K L + +GSL
Sbjct: 326 VLTPNLMHNIRKDNSSSSERLLKDQTVVIKTLLKNAGSL 364


>SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)
          Length = 588

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 255 IKQ*IKNKMFDHGIEASLPAQWKFMDIFLEEVST 154
           ++Q + + + +H   A+ P   K  D+FL+EVST
Sbjct: 390 MRQDMADDILNHPFLAATPDNLKIQDLFLKEVST 423


>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 255  IKQ*IKNKMFDHGIEASLPAQWKFMDIFLEEVST 154
            ++Q + + + +H   A+ P   K  D+FL+EVST
Sbjct: 981  MRQDMADDILNHPFLAATPDNLKIQDLFLKEVST 1014


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,074
Number of Sequences: 59808
Number of extensions: 391398
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)