Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71258-15|CAN86575.1|  135|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z71258-14|CAN86574.1|  201|Caenorhabditis elegans Hypothetical p...    29   3.7  
AC006817-1|ABA00162.1|  163|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.4  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.4  
U41996-8|AAA83477.1|  310|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.4  
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z71258-15|CAN86575.1|  135|Caenorhabditis elegans Hypothetical
           protein C01H6.8b protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 285 RPGKNRWVTLDAGGNGPAALEIT 353
           RP + RW+T   GG+GP   E+T
Sbjct: 81  RPFQRRWLTALRGGDGPTIEEVT 103


>Z71258-14|CAN86574.1|  201|Caenorhabditis elegans Hypothetical
           protein C01H6.8a protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 285 RPGKNRWVTLDAGGNGPAALEIT 353
           RP + RW+T   GG+GP   E+T
Sbjct: 147 RPFQRRWLTALRGGDGPTIEEVT 169


>AC006817-1|ABA00162.1|  163|Caenorhabditis elegans Hypothetical
           protein Y72A10A.1 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 143 KKNHVLTSSRKISINFHCAGKDASIPWSNILFLIYCFICYLQSRDGP 283
           +KNH  +   K+++N      D  I W   +  IYC  C+    +GP
Sbjct: 18  RKNHC-SGHEKMTVNISF---DGPIFWKRQVAYIYCCSCHFDEHEGP 60


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 139 WSGGSRWTFSLLCGWLAGYVKVKLTKPPVAQQPTSKP 29
           WS  S  T      +L GY K+  TK      PTS P
Sbjct: 612 WSCSSLLTVDCFTDFLTGYYKIHYTKYRELSDPTSVP 648


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 139 WSGGSRWTFSLLCGWLAGYVKVKLTKPPVAQQPTSKP 29
           WS  S  T      +L GY K+  TK      PTS P
Sbjct: 612 WSCSSLLTVDCFTDFLTGYYKIHYTKYRELSDPTSVP 648


>U41996-8|AAA83477.1|  310|Caenorhabditis elegans Hypothetical
           protein F38E1.3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 239 KIKCSTMVLKHLCR-RSGSLWISFL---KKSAHGFFFLVRRKSLDFLSSLRMAGG 87
           K+K   M+LK +C  R  S +   +   KK   GFFFLV   +   L+ L+   G
Sbjct: 65  KLKMEIMILKLVCNERQTSHFTKIIDRGKKDKEGFFFLVMELAGSSLADLKRNRG 119


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 139 WSGGSRWTFSLLCGWLAGYVKVKLTKPPVAQQPTSKP 29
           WS  S  T      +L GY K+  TK      PTS P
Sbjct: 612 WSCSSLLTVDCFTDFLTGYYKIHYTKYRELSDPTSVP 648


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 238 FNLLFYMLSAVTRWTDDLVRTAGSRWMQVATD-----RPHWRSLGEAYVQQWTMD 387
           FNL  Y+L+  +R+   ++R   +RW ++ T+       +W+       ++W  D
Sbjct: 203 FNLERYLLAKQSRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKD 257


>AF067622-2|AAK68367.1|  651|Caenorhabditis elegans Hypothetical
           protein F33E11.3 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 56  RRFSQFDFDIPRQPSAEKRESPATSS*PKKKNHVLTSSRKISI 184
           RR   F F+ P  P+A K  S   S+ P + +    ++ +I +
Sbjct: 77  RRVENFQFEPPTTPAASKSHSSKKSTTPTQSDSAAAAAARIDL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,664
Number of Sequences: 27780
Number of extensions: 299292
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)