Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0130
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26180.1 68417.m03768 mitochondrial substrate carrier family ...    29   2.0  
At1g14560.1 68414.m01731 mitochondrial substrate carrier family ...    29   2.6  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   3.4  

>At4g26180.1 68417.m03768 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 325

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 33  LDVGC*ATGGLVSLTLTYPASHPQRREKVQRLPPDQKKKT 152
           L + C +  GL+  TLTYP    +R+ +V+RL    K++T
Sbjct: 215 LKLVCGSVAGLLGQTLTYPLDVVRRQMQVERLYSAVKEET 254


>At1g14560.1 68414.m01731 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 331

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 6   PDELYHMRGLDVGC*ATGGLVSLTLTYPASHPQRREKVQRLPP 134
           P+E  +   + + C A  GL   T+TYP    +R+ +V+ L P
Sbjct: 220 PEEHQNSVRMHLPCGALAGLFGQTITYPLDVVRRQMQVENLQP 262


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 183 MDIFLEEVSTWFFFFGQEEVAGLSLFSADGWRGMSK 76
           M IFL ++  W   FG +++  +S+ +   W  + K
Sbjct: 454 MCIFLSQIKEWMIEFGSDDIISISIRTDVAWYRLGK 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,047
Number of Sequences: 28952
Number of extensions: 278670
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)