Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0127
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          46   1e-04
AF080234-1|AAC63294.1|  572|Homo sapiens polymerase protein.           44   4e-04
AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.          40   0.006
AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens ...    40   0.011
AK127568-1|BAC87038.1|  215|Homo sapiens protein ( Homo sapiens ...    36   0.17 
AJ233632-1|CAA13576.1|  109|Homo sapiens reverse transcriptase p...    31   2.8  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
 Frame = +1

Query: 286 GFRLKFTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKDFPVPRTQKNIRQFLGKINFY 465
           G+++   K       V+YLG  I++      ++    I   P P+++K +R+FLG   F 
Sbjct: 360 GYKVSKKKAQICRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAAGFC 419

Query: 466 HGFIPNRAKILDPLLIY*K---KTKSSFGSDKCQEAFETVKTLLCSQP 600
             +IPN A +  PL    K   +    +GS + Q+AF  +K  L S P
Sbjct: 420 RLWIPNFAVLAKPLYEVTKWGDREPFEWGSQQ-QQAFRELKEKLMSAP 466


>AF080234-1|AAC63294.1|  572|Homo sapiens polymerase protein.
          Length = 572

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
 Frame = +2

Query: 5   TLDINSAFWSIPLRIEDKNKTGFVTQ-------DGHYQWTCLPFGLKTSPAIFQRILHNI 163
           T+D+   F++IPL  +D  K  F             +QW  LP G+  SP I Q  +   
Sbjct: 103 TIDLKDCFFTIPLAEQDCEKFAFTISAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRA 162

Query: 164 LR--KYKLTD-FTVNFIDDILIFSKTFSDHINHLHNFLK 271
           L+  + K +D + +++IDDIL  ++T  D +   + FL+
Sbjct: 163 LQPVREKFSDCYIIHYIDDILCAAET-KDKLIDCYTFLQ 200


>AF480924-3|AAM81188.1|  863|Homo sapiens pol protein protein.
          Length = 863

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
 Frame = +2

Query: 8   LDINSAFWSIPLRIEDKNKTGFVTQ-------DGHYQWTCLPFGLKTSPAIFQRILHNIL 166
           LD+   F+SIPL  +D  +  F          D  Y+W  LP G+  SPAI Q  +   +
Sbjct: 113 LDLKDCFFSIPLHEQDIQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSPAICQLYVDQAV 172

Query: 167 RKYKLTDFTV---NFIDDILIFSKTFSDHINHLHNFLKQSKQKV 289
              +     V   +++DD+LI +++ S H+   +  L    +KV
Sbjct: 173 EPVRQQCPKVQILHYMDDLLITAESES-HLMEAYKLLLLYLEKV 215


>AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45337 fis, clone BRHIP3007960. ).
          Length = 248

 Score = 39.5 bits (88), Expect = 0.011
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +2

Query: 2   STLDINSAFWSIPLRIEDKNKTGFVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKL 181
           + +D+ +AF+SIP+    + +  F  Q   Y +T LP     SPA+   ++   L  + L
Sbjct: 6   AAIDLANAFFSIPVHKAHQKQFAFSWQGQQYTFTVLPQRYSNSPALCHNLIRRDLDCFLL 65

Query: 182 TD--FTVNFIDDILIFSKT 232
                 V++IDDI++   +
Sbjct: 66  LQSITLVHYIDDIMLIGSS 84


>AK127568-1|BAC87038.1|  215|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45661 fis, clone CTONG2026987. ).
          Length = 215

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 301 FTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKDFPVPRTQKNIRQFLGKINFYH 468
           F++   +S S+ YL  ++ +N      D +  I   P P T++ +  FLG + ++H
Sbjct: 159 FSQAQISSSSITYLDIVLHENTRALPADCVWLISQTPTPSTKQQLLSFLGMVGYFH 214


>AJ233632-1|CAA13576.1|  109|Homo sapiens reverse transcriptase
           protein.
          Length = 109

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 11  DINSAFWSIPLRIEDKNKTGFVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKL-TD 187
           D+ +AF SIP+    + +  F  Q   Y +T L  G   SPA+   ++   L  + L  D
Sbjct: 42  DLANAFCSIPVHKAHQKQFAFGWQGQEYTFTVLSQGYINSPALCHNLVQRDLDHFSLPQD 101

Query: 188 FTV-NFID 208
            T+ ++ID
Sbjct: 102 ITLFHYID 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,334,969
Number of Sequences: 237096
Number of extensions: 1886068
Number of successful extensions: 2917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)