Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0127
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 60 1e-09
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 60 1e-09
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 60 1e-09
U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 28 5.2
U41017-7|AAY86315.1| 251|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 27 9.1
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 274 IKTEGFRLKFTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKDFPVPRTQKNIRQFLGK 453
I+ G +L+ +KC A V+YLGH + + ++ +K F P K ++ FLG
Sbjct: 1205 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1264
Query: 454 INFYHGFIPNRAKILDPLLIY*KKTKSSFGSDKCQE-AFETVKTLLCSQPI 603
+ +Y FI N A+I L K ++ +K QE AF+ +K L+C P+
Sbjct: 1265 VGYYRKFILNFAQIASSLTSL-ISAKVAWIWEKEQEIAFQELKKLVCQTPV 1314
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +2
Query: 2 STLDINSAFWSIPLRIEDKNKTGFVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKL 181
+ D+ + FW IPL + K T F ++W LPFGL SPA+FQ + I+ L
Sbjct: 1115 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-L 1173
Query: 182 TDFTVNFIDDILIFSKTFSDHINHLHNFLKQSKQ 283
++DD+LI SK H+ + L + ++
Sbjct: 1174 GVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 1207
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 274 IKTEGFRLKFTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKDFPVPRTQKNIRQFLGK 453
I+ G +L+ +KC A V+YLGH + + ++ +K F P K ++ FLG
Sbjct: 1108 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1167
Query: 454 INFYHGFIPNRAKILDPLLIY*KKTKSSFGSDKCQE-AFETVKTLLCSQPI 603
+ +Y FI N A+I L K ++ +K QE AF+ +K L+C P+
Sbjct: 1168 VGYYRKFILNFAQIASSLTSL-ISAKVAWIWEKEQEIAFQELKKLVCQTPV 1217
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +2
Query: 2 STLDINSAFWSIPLRIEDKNKTGFVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKL 181
+ D+ + FW IPL + K T F ++W LPFGL SPA+FQ + I+ L
Sbjct: 1018 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-L 1076
Query: 182 TDFTVNFIDDILIFSKTFSDHINHLHNFLKQSKQ 283
++DD+LI SK H+ + L + ++
Sbjct: 1077 GVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 1110
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 274 IKTEGFRLKFTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKDFPVPRTQKNIRQFLGK 453
I+ G +L+ +KC A V+YLGH + + ++ +K F P K ++ FLG
Sbjct: 1119 IRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGL 1178
Query: 454 INFYHGFIPNRAKILDPLLIY*KKTKSSFGSDKCQE-AFETVKTLLCSQPI 603
+ +Y FI N A+I L K ++ +K QE AF+ +K L+C P+
Sbjct: 1179 VGYYRKFILNFAQIASSLTSL-ISAKVAWIWEKEQEIAFQELKKLVCQTPV 1228
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +2
Query: 2 STLDINSAFWSIPLRIEDKNKTGFVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKL 181
+ D+ + FW IPL + K T F ++W LPFGL SPA+FQ + I+ L
Sbjct: 1029 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-L 1087
Query: 182 TDFTVNFIDDILIFSKTFSDHINHLHNFLKQSKQ 283
++DD+LI SK H+ + L + ++
Sbjct: 1088 GVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRK 1121
>U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical
protein F57C12.2 protein.
Length = 556
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 559 EAFETVKTLLCSQPIP*NFWIPYLPINIYTDGFFRRY 669
E + +T++C Q I NF + YLP +Y FF+ +
Sbjct: 400 EVIKCNRTIMCCQ-IALNFKMKYLPTTVYDHTFFKAW 435
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 415 PRTQKNIRQFLGKINFYHGF-IPNRAKILDPL 507
P+T+ N+ + +NF+HGF +P+R + D L
Sbjct: 168 PQTKPNMDEMRTHMNFHHGFQLPDRQYLSDEL 199
>U41017-7|AAY86315.1| 251|Caenorhabditis elegans Hypothetical
protein T26C11.8 protein.
Length = 251
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 604 ELVGSIARFLQSQMLLGIYQTQMNF---WFFFSKLVTGLIFLH 485
E GS FL+SQ LLG Y + F +F V G+ F++
Sbjct: 168 EKFGSEENFLESQFLLGFYNCLVTFACCLVYFLPTVLGIWFMY 210
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 158 YEVFFEKWLETFLIRMVNKSTDNAHLGLRILSY 60
Y+ F K++E+F + +S NA+ R LSY
Sbjct: 817 YQPIFLKYVESFKALLEKRSNPNAYFAARNLSY 849
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 158 YEVFFEKWLETFLIRMVNKSTDNAHLGLRILSY 60
Y+ F K++E+F + +S NA+ R LSY
Sbjct: 817 YQPIFLKYVESFKALLEKRSNPNAYFAARNLSY 849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,310
Number of Sequences: 27780
Number of extensions: 326120
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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