Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0127
(669 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 24 1.1
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 24 1.5
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 3.5
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.5
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 4.6
AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein. 22 4.6
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 6.1
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 6.1
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 6.1
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 21 8.0
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 21 8.0
AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein. 21 8.0
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 41 LRIEDKNKTGFVTQDGHYQWTCLPF 115
LR E +KTG V GH W L F
Sbjct: 494 LRKELDSKTGGVNLKGHAHWLTLHF 518
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 23.8 bits (49), Expect = 1.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 253 STQLFEAIKTEGFRLKFT-KCTFASDSVKYLGHIIQKN---CIKPVNDNLISIKD 405
++Q+++ + EG CT A D + L HIIQ + K V ++S++D
Sbjct: 1055 ASQIYDMLVYEGGHFYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRD 1109
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 110 PFGLKTSPAIFQRILHNIL 166
PF ++ P IF+ HN+L
Sbjct: 150 PFDVQECPLIFESWTHNVL 168
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 361 NCIKPVNDNLISIKDFPVP 417
N KP+ N+I+I+ PVP
Sbjct: 329 NNYKPLYYNIINIEQIPVP 347
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 214 NIIDKINCKIRQFILSKYI 158
N++DK N KIR +L K I
Sbjct: 80 NVMDKKNGKIRYNLLKKVI 98
>AY352277-2|AAQ67419.1| 88|Apis mellifera EX4.8-5.8 protein.
Length = 88
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 128 SPAIFQRILHNILRKYKLTDFT 193
+P+ I HNILR + TD T
Sbjct: 26 APSKNTTITHNILRGMQFTDIT 47
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 302 NFNLKPSVLIASKS 261
NFN +P+V + SKS
Sbjct: 468 NFNERPAVAVVSKS 481
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 302 NFNLKPSVLIASKS 261
NFN +P+V + SKS
Sbjct: 468 NFNERPAVAVVSKS 481
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 302 NFNLKPSVLIASKS 261
NFN +P+V + SKS
Sbjct: 468 NFNERPAVAVVSKS 481
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 634 LVNMESKNFKELVGSIARFLQSQMLLGIYQTQMNFWF 524
LV +E+K S+ L + L + +TQ+ WF
Sbjct: 20 LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWF 56
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 21.4 bits (43), Expect = 8.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 289 FRLKFTKCTFASDSVKYLGHIIQKNCIKPVNDNLISIKD 405
FRL +S K + I+++ C+ N I IKD
Sbjct: 12 FRLSKVMLDHTINSKKTIMRILKEVCVLQANRACILIKD 50
>AB248729-1|BAF02606.1| 43|Apis mellifera distal-less protein.
Length = 43
Score = 21.4 bits (43), Expect = 8.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 559 LGIYQTQMNFWF 524
LG+ QTQ+ WF
Sbjct: 18 LGLTQTQVKIWF 29
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,978
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -