Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0127
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase, puta...    29   2.1  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    29   2.1  
At5g56820.1 68418.m07090 F-box family protein contains F-box dom...    29   2.8  
At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family...    28   6.5  

>At2g22190.1 68415.m02635 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 269

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 614 KFQGIGWEHSKVFTVSNASWHLSDPNELLVF 522
           K QG+G   SK    +NAS+ L +P+E++VF
Sbjct: 225 KKQGLGILVSKYAKETNASYSLQEPDEVMVF 255


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
            (PAUSED) contains Pfam profile: PF04150 exportin-t,
            identical to PAUSED gi:30909318
          Length = 988

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -2

Query: 155  EVFFEKWLETFLIRMVNKSTDNAHLGLRILSYFCLQFVEGS 33
            +V +EK+  TFL+ +++KS  +AH+   +   +C Q ++G+
Sbjct: 922  KVMYEKFGNTFLMHLMSKSFPSAHIPQDLAEQYC-QKLQGN 961


>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 250 PSTQLFEAIKTEGFRLKFTKCTFASDSVKYLGHIIQKNCIKPVND--NLISIKDFPVPRT 423
           PS Q   +I  E +R + T    +  S+KYL    Q +C K V D  NL+          
Sbjct: 209 PSLQRL-SICDESYRFRSTTFEISVPSLKYLKIACQDSCFKFVEDMPNLVEAHVEANQHE 267

Query: 424 QKNIRQFLGKI 456
            KN+ +FL  +
Sbjct: 268 TKNLLRFLTSV 278


>At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family
           protein contains Pfam profile: PF00382 transcription
           factor TFIIB repeat
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 71  FVTQDGHYQWTCLPFGLKTSPAIFQRILHNILRKYKLTDFTVNFIDDILIFSKTFSDHIN 250
           F + D H        G  T+P +    L  I+ K K T  +V   DDI    +  +   N
Sbjct: 47  FASDDNHSDRDPNRVGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKN 106

Query: 251 HLHNFLKQSKQKV 289
           H  + +KQ+ +++
Sbjct: 107 HEEDLIKQAFEEI 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,939
Number of Sequences: 28952
Number of extensions: 292728
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)