Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0126
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   1.1  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    27   2.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   2.0  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   4.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 50  YLFSLVLVDIGFSDCCSLVGSILCGPIVC 136
           Y F L++ +IGFS C    G     PI C
Sbjct: 20  YYFLLIITEIGFSSCIQYSGLSAYFPIKC 48


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 324 LNYCEDH--PDTCKNGGQCQSLEAQADTIDASVLPESPASIVTSYQL 190
           L+YC +H  P     G  C+S   + +  D S   E P S  T  +L
Sbjct: 235 LSYCYNHKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRL 281


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/17 (58%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
 Frame = +3

Query: 255 PVLPTI-DIVHRFCMYQ 302
           P+LP I +I+H+FC+YQ
Sbjct: 257 PILPLIYNILHKFCLYQ 273


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 69  SSILGSATVVVLSEVFSADPSSVITSTVNSWTVLASVVVILAGM 200
           +S + + T +  +E  +AD + V+ STV  +TV   + +  AGM
Sbjct: 14  NSTIATVTELFPNEYSNADIAYVLLSTVVVFTVTPGIALYYAGM 57


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 57   SVSFSSILGSATVVVLSEVFSADPSSVITSTVNSWTVLAS 176
            +++ SSIL S+T V  S V ++      ++ VNS T + S
Sbjct: 3347 AITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITS 3386



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 60   VSFSSILGSATVVVLSEVFSADPSSVITSTVNSWTVLAS 176
            ++ SSIL S+T +  S V ++      ++ VNS T + S
Sbjct: 1236 ITSSSILNSSTPITSSSVLNSSTPITSSTVVNSSTPITS 1274



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 57   SVSFSSILGSATVVVLSEVFSADPSSVITSTVNSWTVLAS 176
            +++ SSIL S+T +  S + ++      ++ VNS T + S
Sbjct: 3119 AITSSSILNSSTPITSSSILNSSTPITSSTVVNSSTPITS 3158


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 72  SILGSATVVVLSEVFSADPSSVITSTVNSWTVLAS 176
           SI  S+T    S   ++ PSS+ +S  +S T+L+S
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISSSSTILSS 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,078
Number of Sequences: 5004
Number of extensions: 58584
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)