Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0126
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    31   0.67 
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906           29   3.5  
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081...    28   6.2  
03_01_0407 + 3148282-3148587,3148715-3148850,3149230-3149366,314...    28   6.2  

>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 336 YIFIEFSVELLSLXEFVDCLFSLSKSYR*MKSRSTW-C*VESGANMVELIWCFMC 497
           Y+F+ FS  LL L  F  C   + K  R  +S S W   +++ A++V +I+CF+C
Sbjct: 284 YMFV-FSTTLLCLYVFAFCWVYIIK-IRNAESLSVWKAMLKTPASIVLIIYCFLC 336


>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
          Length = 618

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 324 LNYCEDHPDTCKNGGQCQSLEAQADTID 241
           L+YC D P   KNG  C S    AD ++
Sbjct: 318 LSYCPDAPFRSKNGWTCLSAAVHADRLE 345


>08_02_1582 +
           28007169-28007188,28007278-28007312,28007945-28008130,
           28008783-28008962,28009290-28009474,28009593-28009688,
           28009888-28009933,28010054-28010160,28010893-28010994,
           28011080-28011614,28012296-28012366,28012747-28012830
          Length = 548

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 309 DHPDTCKNGGQCQSLEAQADTIDASVLPESPASIVTSYQLI*PRP 175
           D    CK    C+ LEA+  +I+ ++LP     ++  Y ++ P+P
Sbjct: 16  DSQALCKRAESCE-LEAEVPSINPTLLPVLEDLLIELYAILRPKP 59


>03_01_0407 +
           3148282-3148587,3148715-3148850,3149230-3149366,
           3149664-3149787,3150045-3150394
          Length = 350

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 468 MVELIWCFMCFMVALGSAPGIADVHERR*PLTIR 569
           MV L W F    +ALG+A G+A +HE   P+  R
Sbjct: 150 MVPLPW-FTRMKIALGAAKGLAFLHEAEKPVIYR 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,858,192
Number of Sequences: 37544
Number of extensions: 404073
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)