Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0126
         (699 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    30   0.081
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    25   3.0  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   4.0  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 29.9 bits (64), Expect = 0.081
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 244 RCQCPSGVTGKHCDVIPAN 188
           RCQC  GVTG+ CD   +N
Sbjct: 414 RCQCKPGVTGEKCDRCDSN 432



 Score = 23.4 bits (48), Expect = 7.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 241 CQCPSGVTGKHCD 203
           C C  GV GK CD
Sbjct: 958 CFCKPGVVGKKCD 970


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 572 PPDGKWSPSLMDVSNARGRAKRYHKAHKAPY 480
           PPD  W P ++  +NA G  +  +K++   Y
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 134


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 244 RCQCPSGVTGKHCDVIPANMT 182
           +C+C  G TG  CD   +N T
Sbjct: 615 QCECREGWTGPACDCRASNET 635



 Score = 23.0 bits (47), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 86  SDCCSLVGSILCGPIVCD-HFHGE 154
           +D CS  G+  CG   CD  +HG+
Sbjct: 509 ADECSNAGTYKCGICECDGTYHGQ 532


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,238
Number of Sequences: 2352
Number of extensions: 16091
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)