Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0126
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36920.1 68414.m04598 hypothetical protein 31 0.97
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.0
At4g23860.2 68417.m03431 PHD finger protein-related similar to P... 29 3.9
At4g23860.1 68417.m03430 PHD finger protein-related similar to P... 29 3.9
At2g41510.1 68415.m05129 FAD-binding domain-containing protein /... 28 5.2
At5g62630.1 68418.m07861 expressed protein 28 6.8
>At1g36920.1 68414.m04598 hypothetical protein
Length = 221
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -3
Query: 172 ASTVQEFTVEVITDDGSAENTSDKTTTVAE------PNIDENETE*IYNSLILILIFRFM 11
AST+ + E+IT G++ TS TTT AE N+D NE Y S + RF+
Sbjct: 149 ASTLNDIEQEIITVSGNSVGTSIGTTTQAEINFVDVDNLDNNEDNAYYISTPKPITKRFL 208
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 185 DHDRG*HRPRIHRGSDHRRWVRREYFRQDYNSR-*TQYRRERD 60
D DR HR R HR S HR R R++ R YRR RD
Sbjct: 88 DKDRD-HRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD 129
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 185 DHDRG*HRPRIHRGSDHRRWVRREYFRQDYNSR-*TQYRRERD 60
D DR HR R HR S HR R R++ R YRR RD
Sbjct: 88 DKDRD-HRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD 129
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 185 DHDRG*HRPRIHRGSDHRRWVRREYFRQDYNSR-*TQYRRERD 60
D DR HR R HR S HR R R++ R YRR RD
Sbjct: 88 DKDRD-HRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD 129
>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = -3
Query: 298 YMQKRWTMSIVGSTGGHYRCQCPSGVTGKHCDVIPA---NMTTTEASTVQEFTVEVITDD 128
Y + W ++ V STG C + H D P N T E S V + + E I+D
Sbjct: 201 YPENLWVVAKVDSTGSANACSETIELDKNHMDSEPGQPENGTDAEKSVVGKCS-ETISDS 259
Query: 127 --GSAENTSDKTTTVAE---PNIDENE 62
G EN ++ +V + IDE+E
Sbjct: 260 EPGQPENGTEAEKSVVQKCSEKIDESE 286
>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = -3
Query: 298 YMQKRWTMSIVGSTGGHYRCQCPSGVTGKHCDVIPA---NMTTTEASTVQEFTVEVITDD 128
Y + W ++ V STG C + H D P N T E S V + + E I+D
Sbjct: 201 YPENLWVVAKVDSTGSANACSETIELDKNHMDSEPGQPENGTDAEKSVVGKCS-ETISDS 259
Query: 127 --GSAENTSDKTTTVAE---PNIDENE 62
G EN ++ +V + IDE+E
Sbjct: 260 EPGQPENGTEAEKSVVQKCSEKIDESE 286
>At2g41510.1 68415.m05129 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [gi:3882018] [gi:3441978]
Length = 575
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 662 SYF-KVMKTFSXXXXXXXLFFMAFVGRRAYGPPDGKWSPSLMDVSNARGRAKRYHKAHKA 486
S+F K +TF+ + G+R + GK SP + S A G +RYH A
Sbjct: 510 SHFGKRWETFAQRKQAYDPLAILAPGQRIFQKTTGKLSPIQLAKSKATGSPQRYHYASIL 569
Query: 485 P 483
P
Sbjct: 570 P 570
>At5g62630.1 68418.m07861 expressed protein
Length = 696
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 71 VDIGFSDCCSLVGSILCGPIVCDHFHGEFL--DGASL 175
++I S+C SL+ SILC CD F G+ D +SL
Sbjct: 68 MNISDSNCSSLLKSILCSK--CDEFSGQLFGDDDSSL 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,571
Number of Sequences: 28952
Number of extensions: 311663
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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