Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   4.5  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   6.0  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   7.9  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 673 WNILPCSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVAAVDGFL 542
           W+ L     L       F+++ EH    K E+  A + ++D F+
Sbjct: 120 WSFLDSEGPLNPLQASYFAKVNEHFLDKKTEETVAFIQSIDNFV 163


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 288 YSTYYFVSALPRLFLSYQIYFSSTILGVF 374
           Y+ ++ V+ L   F +Y+IY S   LGV+
Sbjct: 120 YTDFFTVNGLTGTFDNYEIYASLMALGVY 148


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 121 AN*RHPLRTQRSRLSVQIQMIQTACP 44
           AN R P R   + L++ + M+++ CP
Sbjct: 251 ANDRRPQRCTGTALNISVSMMESVCP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,712
Number of Sequences: 5004
Number of extensions: 46650
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)