Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40437| Best HMM Match : VapD_N (HMM E-Value=2.4)                    51   8e-07
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)                   37   0.014

>SB_40437| Best HMM Match : VapD_N (HMM E-Value=2.4)
          Length = 89

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
 Frame = +1

Query: 31  FQGIMDKLFESFE-SVPTNDFAEFSAGVFNWLEEYCKPQ 144
           F+ I+D  F +F+ +V  NDF   S+G+F+WLEEYCKPQ
Sbjct: 51  FKAILDNQFVTFDGTVVVNDFDSLSSGIFHWLEEYCKPQ 89


>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
          Length = 227

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31  FQGIMDKLFESFES-VPTNDFAEFSAGVFNWLEEYCKPQSLRTMVHGVXRDQNYT 192
           F  ++ +LFES+ S V T +  EF   V  WL+++C   SLR  V    RD + T
Sbjct: 125 FSVLLRQLFESYNSSVSTTNPEEFCRTVLAWLDQHCTLPSLRPAVLAALRDISRT 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,834
Number of Sequences: 59808
Number of extensions: 313135
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)