Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118474-1|AAM49843.1|  254|Drosophila melanogaster GM14426p pro...    71   2e-12
AE014297-4115|AAF56696.1|  254|Drosophila melanogaster CG3350-PA...    71   2e-12
AF213669-1|AAG40148.1|  254|Drosophila melanogaster bHLHZip tran...    69   6e-12
AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynei...    30   2.6  

>AY118474-1|AAM49843.1|  254|Drosophila melanogaster GM14426p
           protein.
          Length = 254

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 41/54 (75%)
 Frame = +1

Query: 1   RLTDQDKFQVFQGIMDKLFESFESVPTNDFAEFSAGVFNWLEEYCKPQSLRTMV 162
           RLTD+ KFQVFQ IM+++FE+F+ +P  +F + + G+  WLEE+CKP  LR ++
Sbjct: 172 RLTDEAKFQVFQAIMEEMFETFQHIPMENFKQLTTGIIPWLEEHCKPHILRNIL 225


>AE014297-4115|AAF56696.1|  254|Drosophila melanogaster CG3350-PA
           protein.
          Length = 254

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 41/54 (75%)
 Frame = +1

Query: 1   RLTDQDKFQVFQGIMDKLFESFESVPTNDFAEFSAGVFNWLEEYCKPQSLRTMV 162
           RLTD+ KFQVFQ IM+++FE+F+ +P  +F + + G+  WLEE+CKP  LR ++
Sbjct: 172 RLTDEAKFQVFQAIMEEMFETFQHIPMENFKQLTTGIIPWLEEHCKPHILRNIL 225


>AF213669-1|AAG40148.1|  254|Drosophila melanogaster bHLHZip
           transcription factor BIGMAXprotein.
          Length = 254

 Score = 68.9 bits (161), Expect = 6e-12
 Identities = 26/53 (49%), Positives = 40/53 (75%)
 Frame = +1

Query: 4   LTDQDKFQVFQGIMDKLFESFESVPTNDFAEFSAGVFNWLEEYCKPQSLRTMV 162
           LTD+ KFQVFQ IM+++FE+F+ +P  +F + + G+  WLEE+CKP  LR ++
Sbjct: 173 LTDEAKFQVFQAIMEEMFETFQHIPMENFKQLTTGIIPWLEEHCKPHILRNIL 225


>AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynein
            protein.
          Length = 4167

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 1    RLTDQDKFQVFQGIMDKLFESFESVPTNDFAEFSAGVFNWLEE 129
            RLT  D   +F GIM  +F    S+PT D++EF+  ++    E
Sbjct: 1742 RLTAND-LPLFNGIMSDIFPGV-SLPTIDYSEFNIAIYEEFRE 1782


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,237,598
Number of Sequences: 53049
Number of extensions: 440004
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)