Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    41   7e-04
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    36   0.021
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    36   0.021
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    36   0.021

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -1

Query: 661 PCSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVAAVDGF 545
           P SPDL  +D+++F  L+ HL G KF D  A+   +D F
Sbjct: 240 PYSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVETWLDDF 278


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = -1

Query: 673 WNILP---CSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVAAVDGFLRVQEV-CF*NGNL 506
           W +LP    SPDL  +D+++F  L +++R  +F+D++ +   +  F   +    F  G +
Sbjct: 261 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 320

Query: 505 VLEKRYKKCI 476
           +L  ++++ +
Sbjct: 321 MLPSKWQQVV 330


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = -1

Query: 673 WNILP---CSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVAAVDGFLRVQEV-CF*NGNL 506
           W +LP    SPDL  +D+++F  L +++R  +F+D++ +   +  F   +    F  G +
Sbjct: 236 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 295

Query: 505 VLEKRYKKCI 476
           +L  ++++ +
Sbjct: 296 MLPSKWQQVV 305


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = -1

Query: 673 WNILP---CSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVAAVDGFLRVQEV-CF*NGNL 506
           W +LP    SPDL  +D+++F  L +++R  +F+D++ +   +  F   +    F  G +
Sbjct: 261 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 320

Query: 505 VLEKRYKKCI 476
           +L  ++++ +
Sbjct: 321 MLPSKWQQVV 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,117,453
Number of Sequences: 27780
Number of extensions: 254307
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)