Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    43   2e-06
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = -1

Query: 673 WNILP---CSPDLGSSDFYVFSRLKEHLRGHKFEDDDAIVA-AVDGFLRVQEVCF*NGNL 506
           W++LP    SPDL  SD+++F  L+  L G  F +DD I +  +  F    +  +  G +
Sbjct: 264 WDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIM 323

Query: 505 VLEKRYKKCI 476
           +L +R++K I
Sbjct: 324 MLPERWQKVI 333


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 50  SCLNHLNLYRQTTSLSSQRVSSIGW 124
           SC  +L LY     + S R++S GW
Sbjct: 159 SCPMNLKLYPLDRQVCSLRMASYGW 183


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 50  SCLNHLNLYRQTTSLSSQRVSSIGW 124
           SC  +L LY     + S R++S GW
Sbjct: 159 SCPMNLKLYPLDRQVCSLRMASYGW 183


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 YSTYYFVSALPRLFLSYQIYFSST 359
           +S Y F+  L  +F+S  + +SST
Sbjct: 476 FSIYSFLERLNLIFMSSSLQWSST 499


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 YSTYYFVSALPRLFLSYQIYFSST 359
           +S Y F+  L  +F+S  + +SST
Sbjct: 514 FSIYSFLERLNLIFMSSSLQWSST 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,352
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)