Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0124
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    29   3.0  
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    28   5.2  

>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 19  KFQVFQGIMDKLFESFESVPTNDFAEFSAGVFNWLEE 129
           +F+VF+ +  K+ ++ E V  N  ++  +G+ +W+ E
Sbjct: 78  RFKVFETVWSKIEKTIEDVLRNSNSKVFSGIHDWIRE 114


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 285 FYSTYYFVSALPRLFLSYQIYFSSTIL 365
           FYS++  +S  P+L LS Q  F++T+L
Sbjct: 503 FYSSFALLSLFPKLALSIQRDFAATVL 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,480
Number of Sequences: 28952
Number of extensions: 223262
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)