Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0123
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   9.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   9.6  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 459 LHIFCVFYGIGVXF 418
           LH+FCV Y + + F
Sbjct: 171 LHLFCVLYVVLLHF 184


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 459 LHIFCVFYGIGVXF 418
           LH+FCV Y + + F
Sbjct: 171 LHLFCVLYVVLLHF 184


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 576 ISEELFRK*IHNWYQPEMHHGIFVX*N*NHPKCSTTTAKLHIFCVFYGIGVXFSGTW 406
           +  E+ +K +H+     +   IF   N NH +     +K   FC F    V  S T+
Sbjct: 1   MQHEVVKKFLHSVRIVFVQSEIFCLVNFNHRESYFRLSKAKSFCTFVAALVYCSVTF 57


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 413 ARGPLYLLILISCTRVQYF 357
           A  P++++I ++ T V YF
Sbjct: 497 AESPIFIIIPVTLTSVCYF 515


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,252
Number of Sequences: 336
Number of extensions: 3569
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)