Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0123
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    29   0.64 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   2.6  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   5.9  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   7.8  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 512 MPWCISGWYQLCIYLRKSSSEILYFX*LXLWVCDLTGPRDVK*LPE 649
           +PW  S ++ L + LRK ++ IL+   L +   +   P+D++ + E
Sbjct: 648 LPWVSSVYFTLGLKLRKFNTSILHLNDLEVLQIEFLAPKDIECVAE 693


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 311 HNQTPARTFLCAMGAE 358
           HNQ+P  T+ CAMG +
Sbjct: 706 HNQSPRNTYQCAMGKQ 721


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 535 PARDAPRHICXMKLKSSKMQHNYCEATYILCILRY 431
           PAR  P HI  M L S+K   +Y + + +  ++ Y
Sbjct: 446 PARSYPAHIPLMSLSSTKRMASYIKLSILKKMVVY 480


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 675 PFTLLMSMYSGNYLTS 628
           PF L+ ++YSG Y+T+
Sbjct: 80  PFALVFTLYSGTYMTA 95


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 566 NSFVNKYITGTSPRCTTAYL 507
           NSF +KY+T T P+ T+  L
Sbjct: 345 NSFESKYLTSTGPKNTSKQL 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,513
Number of Sequences: 5004
Number of extensions: 57796
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)