Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0123
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  31   1.2  
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_18042| Best HMM Match : Exo_endo_phos (HMM E-Value=0.1)             29   4.8  
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 550  NT*LVPARDAPRHICXMKLKSSKMQHNYCEATYILCIL 437
            NT   PA+DA       K K   + H +    Y+LC+L
Sbjct: 922  NTSAKPAKDADESAAKKKKKGRTLPHGFVYVAYVLCLL 959


>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 252 PCRSL-SLTYPARPFCAVTS*EVRPSTRKKKKEGLIVDICFN*K*IIKACISFL 94
           PCR+L +  + +R     +S E+RPS R  +   LI     + K I+ +C++ L
Sbjct: 585 PCRALIAYLFCSRSISRKSSSEIRPSCRALETSTLIEFFLLSAKTIVSSCLATL 638


>SB_18042| Best HMM Match : Exo_endo_phos (HMM E-Value=0.1)
          Length = 253

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 277 LGPAVCSHTMQIVESHIPRAPXLRGDLVGGSALYTKK 167
           LG   C + +QI   H P      G L GG  LY K+
Sbjct: 29  LGENSCENNLQIPGYHFPACNRCNGMLHGGVGLYVKQ 65


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 ISGWYQLCIYLRKSSSEILY 583
           ISGW+  C Y+R  S  +LY
Sbjct: 829 ISGWFHACCYIRVISRVLLY 848



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 ISGWYQLCIYLRKSSSEILY 583
           ISGW   C Y+R  + E+LY
Sbjct: 857 ISGWLHACCYIRVVTRELLY 876


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,663,421
Number of Sequences: 59808
Number of extensions: 455945
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)