Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0123
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 401 LYLLILISCTRVQYFQHP 348
           L LLI++ CTR  +F  P
Sbjct: 3   LLLLIVLGCTRSAHFARP 20


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 112 FYNLFLIKANIHNQTLFFFFSCR 180
           FY++ +I + I N T+    +CR
Sbjct: 43  FYSVLMIISAIGNTTVLILITCR 65


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 75 MWSLFVNVQLVINVLFIV 22
          +W+L VNV  V + LF++
Sbjct: 7  IWTLAVNVLFVNSFLFVI 24


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 75 MWSLFVNVQLVINVLFIV 22
          +W+L VNV  V + LF++
Sbjct: 7  IWTLAVNVLFVNSFLFVI 24


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 75 MWSLFVNVQLVINVLFIV 22
          +W+L VNV  V + LF++
Sbjct: 7  IWTLAVNVLFVNSFLFVI 24


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 505 DKYAVVHLGLVPVMYLFTKEFLGN 576
           DKY  V LG V     F + F+GN
Sbjct: 95  DKYKQVFLGGVDKNTQFLRYFVGN 118


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 505 DKYAVVHLGLVPVMYLFTKEFLGN 576
           DKY  V LG V     F + F+GN
Sbjct: 95  DKYKQVFLGGVDKNTQFLRYFVGN 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,209
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)