Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0123
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09550.1 68414.m01071 pectinacetylesterase, putative similar ...    28   5.1  
At5g47580.1 68418.m05873 expressed protein strong similarity to ...    27   9.0  

>At1g09550.1 68414.m01071 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 388

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 79  NESLG*EGNTGFYNLFLIKANIHNQTLFFFFSCRGPNLLRGHRAKXARGVCETQRSAWCV 258
           NES G   N     L L++A      +    S  G +L RG+ +     + + Q  AWC 
Sbjct: 30  NESNGTNANVLMVGLTLVQAAAAKGAVCLDGSVPGYHLCRGYGSGANNWIIQLQGGAWCD 89

Query: 259 SRPRAQ 276
           S    Q
Sbjct: 90  SIQNCQ 95


>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 297 SGWALKSLGPRSAHTPCRSLSLTYPARPF 211
           S W +K+L   S +  C+++ LTY +R +
Sbjct: 609 SHWPIKTLAANSMYRICQTILLTYESRDY 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,879
Number of Sequences: 28952
Number of extensions: 302982
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)