Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0122
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DMG6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q4Q4L3 Cluster: Putative uncharacterized protein; n=3; ...    33   6.8  

>UniRef50_A5DMG6 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 470

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 436 LASSYTFLYLCLLPVVFSVASGLKYNDSKEVFTSKTLQT-LPCI*RTHTDKHFWLLLVCG 612
           LASS +F  LC L V        KY    +  TSK L T LP I   H+D +F L L+  
Sbjct: 52  LASSASFQLLCKLFVP------TKYFKKTDKLTSKQLSTYLPTIVLRHSDLNFQLHLLLA 105

Query: 613 PIKNRFILVVY 645
            I N+F+   Y
Sbjct: 106 SIVNKFVASWY 116


>UniRef50_Q4Q4L3 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 330

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +1

Query: 472 LPVVFSVASGLKYNDSKEVFTSKTLQTLPCI*RTHTDKHFWLLLVCGPIKNRFILVVYSV 651
           L +  SVA  + Y++ +E   S      PCI    +   FW LL+ GP+    +L   +V
Sbjct: 176 LVIGVSVAKEM-YSEMEEDAVSDEADVEPCIKANRSSNRFWRLLIQGPVGVWLLLTPMTV 234

Query: 652 CMVAYL*FLINYSRISTT 705
             V     L+N +  + T
Sbjct: 235 FCVVMCAALLNGATTAVT 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,568,197
Number of Sequences: 1657284
Number of extensions: 12963042
Number of successful extensions: 28129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28111
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)