Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0122
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   3.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 285 LLMTKFYIYLNI*DNCILILEGFTSTTCELHTFCFFY*FNVFLC--IIKICILTFCTPFL 112
           L+   ++ Y+++   C  I+  FT     L   C +Y    F C  II +CI  FC  F+
Sbjct: 255 LVCIYYFYYMHLLFCCAFII--FTMHL--LFLLCIYY----FYCALIILLCIYYFCRAFI 306

Query: 111 YY 106
            +
Sbjct: 307 IF 308



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 186 CFFY*FNVFLCIIKICILTFCTPFLYYLY 100
           C +Y +  F+      +L  C  + YY++
Sbjct: 237 CIYYFYYAFILFTVHLLLLVCIYYFYYMH 265


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 370 NVCMKALVNLGLYLK 326
           N+C K L NLG++ K
Sbjct: 322 NICYKLLSNLGIFPK 336


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 341 RIIPEIKISIHRGRYLTII 285
           R++PEIKI I + + +T +
Sbjct: 85  RVVPEIKIQISQQQSVTAL 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,547
Number of Sequences: 336
Number of extensions: 4177
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)