Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0122
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.65 
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    28   1.1  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   8.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   8.0  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   8.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -1

Query: 303 ALPYNYLLMTKFYIYLNI*DNCILILEGFTSTTCELHTFCFFY*FNVFLCIIKICILTFC 124
           ++P+ +L MT FY  L       L+L      +   HT  FF+ F +      +C+    
Sbjct: 24  SVPFFFLQMTPFYSILCFLSFFALLLH--LPCSIYSHTLHFFHHFTIACYHYSLCLSLVA 81

Query: 123 TPFLYYLYP 97
               Y LYP
Sbjct: 82  LLLFYTLYP 90


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 575 CVRQIHGSVCNVFEVKTSLESLYFKPDATEKTTGKRH 465
           C  +++  V  VFE       L FKP +  KT  K+H
Sbjct: 160 CSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKKH 196


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 502 NRMQRKKRQVRDTNTKMCRMKPAKNETEI 416
           + ++RKK Q  +   K  R KP KN+ +I
Sbjct: 4   SELKRKKHQSGNEEVKEKRQKPLKNDKKI 32


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 478 QVRDTNTKM--CRMKPAKNETEIYILFN 401
           Q+R TN K+  C++   K+E E Y LF+
Sbjct: 98  QLRLTNMKLWNCKLPSLKDEAEFYSLFS 125


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 376 NTNVCMKALVNLGLYLKLKYQFTEGATLQ 290
           NTN C  A+ NLG+ LK +++     T Q
Sbjct: 194 NTNDCNLAIKNLGILLKKEFRVRHMKTPQ 222


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 HFCICVSYLSFFPLHPV*NTTIL 520
           +F  CV Y+S  PLH   N+ I+
Sbjct: 685 YFVFCVFYISLIPLHNSDNSEIV 707


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 379 FNTNVCMKALVNLGLYLKLK 320
           F TNV M++L+NL L+L L+
Sbjct: 416 FPTNVRMESLINLELFLYLR 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,129
Number of Sequences: 5004
Number of extensions: 62315
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)