Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0122
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_51581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13) 29 3.7
SB_20151| Best HMM Match : rve (HMM E-Value=2.9e-12) 29 4.9
SB_59748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_51132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_35010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_27589| Best HMM Match : rve (HMM E-Value=1.5e-11) 28 6.4
SB_19980| Best HMM Match : rve (HMM E-Value=0.91) 28 6.4
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054) 28 6.4
SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_5506| Best HMM Match : rve (HMM E-Value=0.00062) 28 6.4
SB_3855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_3086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_1329| Best HMM Match : rve (HMM E-Value=1.7e-16) 28 6.4
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_50846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_49575| Best HMM Match : Laminin_G_2 (HMM E-Value=4.2) 28 6.4
SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_35447| Best HMM Match : rve (HMM E-Value=9.8e-20) 28 6.4
SB_23285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_15622| Best HMM Match : Pec_lyase_N (HMM E-Value=2.9) 28 6.4
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_1255| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 457 LYLCLLPVVFSVASGLKYNDSKEVFTSKTLQT 552
L+ LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 1489 LHATLLPVVYSVSFDSRYN---ELFTGRSLQS 1517
>SB_51581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 457 LYLCLLPVVFSVASGLKYNDSKEVFTSKTLQT 552
L LLPVV+SV++ +YN E+FT ++LQ+
Sbjct: 66 LCAALLPVVYSVSNESRYN---ELFTGRSLQS 94
>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1606
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 457 LYLCLLPVVFSVASGLKYNDSKEVFTSKTLQT 552
L + LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 1364 LRVTLLPVVYSVSLDSRYN---ELFTGRSLQS 1392
>SB_20151| Best HMM Match : rve (HMM E-Value=2.9e-12)
Length = 438
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 457 LYLCLLPVVFSVASGLKYNDSKEVFTSKTLQT 552
L LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 373 LCAALLPVVYSVSLDSRYN---ELFTGRSLQS 401
>SB_59748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 359 LLPVVYSVSLDSRYN---ELFTGRSLQS 383
>SB_51132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 181 LLPVVYSVSLDSRYN---ELFTGRSLQS 205
>SB_35010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 71 LLPVVYSVSLDSRYN---ELFTGRSLQS 95
>SB_27589| Best HMM Match : rve (HMM E-Value=1.5e-11)
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 262 LLPVVYSVSLDSRYN---ELFTGRSLQS 286
>SB_19980| Best HMM Match : rve (HMM E-Value=0.91)
Length = 367
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 306 LLPVVYSVSLDSRYN---ELFTGRSLQS 330
>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
Length = 338
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 277 LLPVVYSVSLDSRYN---ELFTGRSLQS 301
>SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 835 LLPVVYSVSLDSRYN---ELFTGRSLQS 859
>SB_5506| Best HMM Match : rve (HMM E-Value=0.00062)
Length = 390
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 329 LLPVVYSVSLDSRYN---ELFTGRSLQS 353
>SB_3855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 933 LLPVVYSVSLDSRYN---ELFTGRSLQS 957
>SB_3086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 446 PTHFCICVSYLSFFPLHPV*NTTILKKFSLQK 541
PT + + ++SF P+HP N T+L L+K
Sbjct: 6 PTCTSVTLPFISFSPVHPPPNATVLTLTPLKK 37
>SB_1329| Best HMM Match : rve (HMM E-Value=1.7e-16)
Length = 446
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 385 LLPVVYSVSLDSRYN---ELFTGRSLQS 409
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 162 LLPVVYSVSLDSRYN---ELFTGRSLQS 186
>SB_50846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 180 LLPVVYSVSLDSRYN---ELFTGRSLQS 204
>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 435 LLPVVYSVSLDSRYN---ELFTGRSLQS 459
>SB_49575| Best HMM Match : Laminin_G_2 (HMM E-Value=4.2)
Length = 580
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 466 LLPVVYSVSLDSRYN---ELFTGRSLQS 490
>SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 632 LLPVVYSVSLDSRYN---ELFTGRSLQS 656
>SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 484 LLPVVYSVSLDSRYN---ELFTGRSLQS 508
>SB_35447| Best HMM Match : rve (HMM E-Value=9.8e-20)
Length = 496
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 382 LLPVVYSVSLDSRYN---ELFTGRSLQS 406
>SB_23285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 204 LLPVVYSVSLDSRYN---ELFTGRSLQS 228
>SB_15622| Best HMM Match : Pec_lyase_N (HMM E-Value=2.9)
Length = 511
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+SV+ +YN E+FT ++LQ+
Sbjct: 352 LLPVVYSVSLDSRYN---ELFTGRSLQS 376
>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 889
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 472 LPVVFSVASGLKYNDSKEVFTSKTLQT 552
LPVVFSV+ +YN E+FT ++LQ+
Sbjct: 829 LPVVFSVSLDSRYN---ELFTGRSLQS 852
>SB_1255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 469 LLPVVFSVASGLKYNDSKEVFTSKTLQT 552
LLPVV+S++ +YN E+FT ++LQ+
Sbjct: 172 LLPVVYSISLDSRYN---ELFTGRSLQS 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,038,183
Number of Sequences: 59808
Number of extensions: 428845
Number of successful extensions: 1084
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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