Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0121
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 91 1e-19
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 90 2e-19
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 28 0.75
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.3
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 3.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.2
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.2
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 9.2
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 90.6 bits (215), Expect = 1e-19
Identities = 41/84 (48%), Positives = 53/84 (63%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
IKDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 45 IKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRR 104
Query: 191 XXXXXXTAKKIDRHLYHSLYMRRR 262
+ KID+HLYH+LY+ +
Sbjct: 105 LLRKYRESGKIDKHLYHTLYLEAK 128
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
EAKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 90.2 bits (214), Expect = 2e-19
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
+KDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 45 VKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRR 104
Query: 191 XXXXXXTAKKIDRHLYHSLYMRRR 262
+ KID+HLYH+LY+ +
Sbjct: 105 LLRKYRESGKIDKHLYHTLYLEAK 128
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
EAKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 28.3 bits (60), Expect = 0.75
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = -2
Query: 324 LLSLLPVDVLHEHTLVLEHITLRLM*SEWYRCLSIFLAVLYFRSNFLRTL-----CLCTH 160
L+++ V H +LVL + L + ++ CLS+++++ Y R + L C C
Sbjct: 121 LVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFS 180
Query: 159 SSFCGIRA 136
+F G+ A
Sbjct: 181 GAFGGLIA 188
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 426 FLLLGGNT-----FLAALACLLYFIAAGL 355
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 158 VPSVAYAHWQYLFSYQS 108
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 7.0
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = -2
Query: 357 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLM*SEWYRCLSIFLAVLYFRSNFLRT 178
LSL K + + +LL + + H HTLV E +TL+L + I A++ ++L +
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLF-------VVIPPAIILSFDSYLDS 375
Query: 177 L--CLCTHSSFCGIRALAVPLL 118
L CL + S+ G+ ++ LL
Sbjct: 376 LNDCLLSESTHTGVLCSSLKLL 397
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 396 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 307
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 122 FSYQSHSDDPFYVPLCFCGHGR 57
FS + +D+P Y P+ CG G+
Sbjct: 37 FSQCAITDEPLYPPIVSCGLGK 58
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 459 GFVFSSEGLQQFLLLGGNTFLAA 391
G VFS + L +F+ GGN F+ A
Sbjct: 83 GPVFSPKSLLEFVQSGGNLFVVA 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,274
Number of Sequences: 5004
Number of extensions: 35990
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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