Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0121
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...    97   1e-20
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...    97   1e-20
03_02_0050 + 5272471-5274861                                           30   1.0  
07_03_1639 + 28305801-28305958,28306240-28306249                       29   1.7  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   3.1  
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416     29   3.1  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     28   5.3  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   7.1  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +2

Query: 11  IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
           +KDG +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW         
Sbjct: 45  VKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRR 104

Query: 191 XXXXXXTAKKIDRHLYHSLYMR 256
                  AKKID+H+YH +YM+
Sbjct: 105 LLRKYREAKKIDKHMYHDMYMK 126



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +1

Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
           + KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 126 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +2

Query: 11  IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
           +KDG +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW         
Sbjct: 45  VKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRR 104

Query: 191 XXXXXXTAKKIDRHLYHSLYMR 256
                  AKKID+H+YH +YM+
Sbjct: 105 LLRKYREAKKIDKHMYHDMYMK 126



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +1

Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
           + KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 126 KVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 423 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 265
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
           + KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 2   KVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 28  HQETCSSPLPRPCPQKHR 81
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
          Length = 302

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 133
           G+ +K+    H  +    +    R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 14  KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 142
           KDG  ++    + +RA  R +T+A R+  HC   G+G RR  +  R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 397 RGACVPPLLYCGGP 356
           +GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,085
Number of Sequences: 37544
Number of extensions: 282646
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)