Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0121
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 5e-25
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) 29 1.8
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) 29 1.8
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 29 3.1
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 29 3.1
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 4.1
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 4.1
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 111 bits (266), Expect = 5e-25
Identities = 52/84 (61%), Positives = 58/84 (69%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
IKDGL+IKKP VHSRARVRK EAR KGRH G GKR+GTANARMPQK +W
Sbjct: 73 IKDGLIIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRR 132
Query: 191 XXXXXXTAKKIDRHLYHSLYMRRR 262
AKKID H+YHSLYM+ +
Sbjct: 133 LLRKYREAKKIDNHMYHSLYMKSK 156
Score = 68.1 bits (159), Expect = 4e-12
Identities = 34/70 (48%), Positives = 43/70 (61%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLL 432
++KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ +L
Sbjct: 154 KSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDML 213
Query: 433 QTFAREDEAA 462
+A+E+EAA
Sbjct: 214 SAYAKEEEAA 223
>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 214 QED*QASIPLTLHEAKGNVFKNKRVLMEYIHRKK 315
QE + I + + AK NV KNKR+ ++ + RKK
Sbjct: 47 QEYLEQRIEIETNTAKANVKKNKRIALQALKRKK 80
>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 214 QED*QASIPLTLHEAKGNVFKNKRVLMEYIHRKK 315
QE + I + + AK NV KNKR+ ++ + RKK
Sbjct: 47 QEYLEQRIEIETNTAKANVKKNKRIALQALKRKK 80
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 56 RARVRKNTEARRKGRHCGFGKRRGTANAR 142
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 63
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = -3
Query: 320 SAFFLWMYSMSTRLFLNTLPFASC------RVSGIDACQSSWQFCTSGAIFLEPFVF 168
S +F+W + FL+ PF RV+G+ S WQ CT+ A L+ VF
Sbjct: 464 SNYFIWTLLRNLVPFLSK-PFREAEQTFLIRVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 63
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 426 FLLLGGNTFLAALAC 382
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 410 PPRRRNCCRPSLEKTKPRLPLRSK 481
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 233 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 132
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,540
Number of Sequences: 59808
Number of extensions: 295632
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -