Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0121
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   108   2e-24
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    32   0.29 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   3.6  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    27   6.3  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  108 bits (260), Expect = 2e-24
 Identities = 48/84 (57%), Positives = 58/84 (69%)
 Frame = +2

Query: 11  IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
           + DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW         
Sbjct: 45  VNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRN 104

Query: 191 XXXXXXTAKKIDRHLYHSLYMRRR 262
                  AKK+D+HLYH LY+R +
Sbjct: 105 LLRRYRDAKKLDKHLYHELYLRAK 128



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 256 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
           AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 127 AKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -3

Query: 335 FVLAFSAFFLWMYSMSTRLFLNTLPFASCRVSGIDACQSSWQFCTSGAIFLEPFVFVPIV 156
           F+ A+   FL +  +S R++    PF     S     +  W +C   A+FL    F+P  
Sbjct: 92  FIYAYP-MFLTILMISERIYCIIYPFGRAFTS-----KKLWLYCLGLAMFLLILFFIPFF 145

Query: 155 PSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 57
              A  +  Y F Y S  D D   + L F  + R
Sbjct: 146 GGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 377 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 481
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 424 PPSWRQYVPRGACVPPL 374
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17G9A.2 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 130 STSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDETILDPR 5
           S  S T   +T LS  LC F   G+    Y+ +D  +  DPR
Sbjct: 11  SCPSQTLVVLTLLSLFLCAFTAFGSAFLLYQLMDSTSCKDPR 52


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 398 RNVLPPRRRNCCRPSLEKTKPRLP 469
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/86 (23%), Positives = 34/86 (39%)
 Frame = -3

Query: 326 AFSAFFLWMYSMSTRLFLNTLPFASCRVSGIDACQSSWQFCTSGAIFLEPFVFVPIVPSV 147
           A S F L +Y    R+              I    S + + T  +  L+P++   IV ++
Sbjct: 58  AISHFVLMLYDCDLRMIDMAFAIWPIVTVTIALVFSYFSYSTHSSTSLKPYIAHHIVMAI 117

Query: 146 AYAHWQYLFSYQSHSDDPFYVPLCFC 69
           +Y    +LF+  +     F   L FC
Sbjct: 118 SYCFCLFLFAMFAWKQHFFVEILSFC 143


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 353 AWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFASCRVSGIDACQSSWQFC-TSGAI 189
           A SLS  ++  SAF   +  +  +  +  L F  C + G  AC +++    TSG +
Sbjct: 46  ATSLSQVIMCSSAFLTQVRIVPIQFSIALLSFGPCSIVGPQACLATYNLLNTSGCL 101


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 353 AWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFASCRVSGIDACQSSWQFC-TSGAI 189
           A SLS  ++  SAF   +  +  +  +  L F  C + G  AC +++    TSG +
Sbjct: 46  ATSLSQVIMCSSAFLTQVRIVPIQFSIALLSFGPCSIVGPQACLATYNLLNTSGCL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,520
Number of Sequences: 27780
Number of extensions: 217407
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)