Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0121
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 96 1e-20
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 93 8e-20
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 93 1e-19
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 30 0.84
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.6
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.4
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 4.5
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 28 4.5
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 4.5
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 5.9
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 95.9 bits (228), Expect = 1e-20
Identities = 40/82 (48%), Positives = 53/82 (64%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
+KDG +I+KP +HSR+R R EA+RKGRH G+GKR+GT AR+P K LW
Sbjct: 45 VKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR 104
Query: 191 XXXXXXTAKKIDRHLYHSLYMR 256
+KKIDRH+YH +YM+
Sbjct: 105 FLSKYRESKKIDRHMYHDMYMK 126
Score = 54.4 bits (125), Expect = 4e-08
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
+ KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 126 KVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 93.5 bits (222), Expect = 8e-20
Identities = 39/82 (47%), Positives = 52/82 (63%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
+KDG +I+KP +HSR+R R+ A+RKGRH G+GKR+GT AR+P K LW
Sbjct: 45 VKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRR 104
Query: 191 XXXXXXTAKKIDRHLYHSLYMR 256
KKIDRH+YH +YM+
Sbjct: 105 LLKKYRETKKIDRHMYHDMYMK 126
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 126 KVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 92.7 bits (220), Expect = 1e-19
Identities = 39/82 (47%), Positives = 51/82 (62%)
Frame = +2
Query: 11 IKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXX 190
+KDG +I+KP +HSR+R RK A+ KGRH G+GKR+GT AR+P K LW
Sbjct: 45 VKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRR 104
Query: 191 XXXXXXTAKKIDRHLYHSLYMR 256
KKID+H+YH +YMR
Sbjct: 105 LLKKYRETKKIDKHMYHDMYMR 126
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 259 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 351
KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 30.3 bits (65), Expect = 0.84
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 253 EAKGNVFKNKRVLMEYIHRKKAEK 324
+ KG V+KNK VLME +H+ E+
Sbjct: 43 KVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 350 WSLSIFVLAFSAFFLWMYSMSTRL 279
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 17 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 136
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 199 EVQNCQED*QASIPLTLHEAKGNVFKNKRVLMEYIHRK-KAEKARTKMLSDQ 351
E+ E+ +A+I L +A +F N+ +L EY HR+ + TK+ +D+
Sbjct: 810 EMPTTVEELEAAIQDNLSQANSILFINENILQEYEHRQSQIYTISTKLETDK 861
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 2 GTRIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 130
G + D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 811 GCVLCDELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 369 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 253
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 53 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 160
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,163
Number of Sequences: 28952
Number of extensions: 206357
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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