Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0119
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    54   2e-06
UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia gloss...    32   7.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -2

Query: 112 LLLRWVDELTSQLVVKWLLEPIDIYNVNAPPTLRYKF 2
           LLLRWVDELT+ LV+     P  +Y+VNAPPT RYKF
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           PurU protein - Wigglesworthia glossinidia brevipalpis
          Length = 289

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -2

Query: 166 ENNRKNLTCITLLRKKYILLLRWVDELTSQLVVKWLLEPIDIYNVNAP 23
           ++N K L  I +L+  YI+L +++  LTS  + K++ + I+I++   P
Sbjct: 156 DHNNKILNIIQILKPDYIILAKYMRILTSSFIKKYINKIINIHHSILP 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,973,143
Number of Sequences: 1657284
Number of extensions: 7298727
Number of successful extensions: 15626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15623
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)