Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0119
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   3.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   7.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.5  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 169 YENNRKNLTCITLLRKKYILLLRW 98
           +EN  KNL C T +R+  + LL W
Sbjct: 323 WENEMKNLDCETQVRQLALYLLCW 346


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -2

Query: 322 YPIIFLD-SFR-GSHKLAQKENPLL 254
           +PI  LD S R GS+KL++KENP L
Sbjct: 893 FPIDNLDMSMRTGSYKLSEKENPKL 917


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 181 KFSYYENNRKNLTCITLLRKKYILLLRWVDELTSQ 77
           K+ Y+ N  K+   ++ LR+KY    RW+  L  Q
Sbjct: 450 KWIYFTN--KSPEMVSYLREKYFTPSRWISHLNFQ 482


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 160 NRKNLTCITLLRKKYILLLRW--VDELTSQLVVKWLLE 53
           N  NLTC+ LL K     + W  +DE   QL  + ++E
Sbjct: 73  NHINLTCMLLLYKSKYEYITWDLIDENRFQLFFEKVIE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,784
Number of Sequences: 5004
Number of extensions: 34115
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)