Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0118
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81119-2|CAB03332.1| 350|Caenorhabditis elegans Hypothetical pr... 29 3.3
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 29 3.3
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 3.3
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 3.3
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 3.3
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 3.3
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 3.3
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 3.3
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 3.3
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 3.3
AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical ... 29 4.3
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81147-10|CAB03533.3| 671|Caenorhabditis elegans Hypothetical p... 28 7.5
>Z81119-2|CAB03332.1| 350|Caenorhabditis elegans Hypothetical
protein T10H4.3 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 413 ENNFSQTKQRLFLTILLGFYFTILQAYEYIEALLQLLIEFMDPLFS*XQDFMEFCNNWNF 592
++NF T Q F+ I++ F+ T+L + LLQL + + S D +E N N
Sbjct: 190 QSNFDLTNQLCFIEIIIRFFQTLLYPMLTLTLLLQLHMIKKKRIISSQNDKVENRNLTNL 249
Query: 593 I 595
I
Sbjct: 250 I 250
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 308 PSRITPFNPFQIPLLNTIIL 367
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 265 LVTYLLNLEHHYRNNHYHNFIHAADV 290
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 390 LVTYLLNLEHHYRNNHYHNFIHAADV 415
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 315 LVTYLLNLEHHYRNNHYHNFIHAADV 340
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 328 LVTYLLNLEHHYRNNHYHNFIHAADV 353
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 342 LVTYLLNLEHHYRNNHYHNFIHAADV 367
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 600 LICYIRHLNNHFSKNHHFGFEAAADI 677
L+ Y+ +L +H+ NH+ F AAD+
Sbjct: 389 LVTYLLNLEHHYRNNHYHNFIHAADV 414
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 308 PSRITPFNPFQIPLLNTIIL 367
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 308 PSRITPFNPFQIPLLNTIIL 367
PS +TPFNP+Q+ + I+L
Sbjct: 82 PSMVTPFNPYQLMMYRNIML 101
>AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical
protein K09C6.8 protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 579 IIGTLFLLICYIRHLNNHFSKNHHFGFEAAADID 680
+IG + +++C LN + +HF F AA + D
Sbjct: 79 VIGNMGMVVCRYLALNQYHQTIYHFHFRAAINFD 112
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 615 EYSKLIEIKFQLLQNSMKSXXYEKSGSINSISNCKRA 505
E S+ I + LLQ+S + YE +G++ ++SN A
Sbjct: 242 EASRFIRCVYNLLQSSSPAVRYEAAGTLVTLSNVPAA 278
>Z81147-10|CAB03533.3| 671|Caenorhabditis elegans Hypothetical
protein T09E11.4 protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 403 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 492
LID + LL NKT F YF F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,138
Number of Sequences: 27780
Number of extensions: 199505
Number of successful extensions: 477
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -