BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0117 (696 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 50 2e-06 05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 31 0.87 04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 28 8.1 02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 8.1 >01_06_1516 - 37908284-37908497,37909666-37909733,37909809-37910186, 37910315-37910393,37910433-37910749 Length = 351 Score = 50.0 bits (114), Expect = 2e-06 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +1 Query: 256 WFXFIQHNIP-IDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDWLI 429 WF + ++P + D +YL+ SP ++R+ R RSEE V L Y+ LH HE WL+ Sbjct: 155 WFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWLL 213 >05_05_0357 + 24377989-24378039,24378601-24378632,24378724-24378818, 24379165-24379237,24379804-24379867,24380465-24380732, 24381132-24381202,24382028-24382084,24382302-24382403, 24382544-24382588,24383616-24383693,24384350-24384400, 24384475-24384556,24384883-24384956,24386093-24386144, 24386230-24386288,24386380-24386456,24386692-24386778, 24387011-24387101 Length = 502 Score = 31.1 bits (67), Expect = 0.87 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = -3 Query: 541 AFLKI*CSLLLIHRLSERGLNQHLTLIL 458 AFLK CSLL I+++ E G+++HL + L Sbjct: 234 AFLKCICSLLHINKIFEVGISEHLAIKL 261 >04_04_0318 + 24347364-24348826,24348920-24349048,24349158-24349293, 24349447-24349535,24349631-24349742,24349836-24349942, 24350033-24350129 Length = 710 Score = 27.9 bits (59), Expect = 8.1 Identities = 9/27 (33%), Positives = 20/27 (74%) Frame = +1 Query: 355 ARSEEQCVPLSYIEELHRLHEDWLINR 435 ++SE +C+ L +E + LH++W+++R Sbjct: 462 SQSEVKCLMLQLLEGVKYLHDNWVLHR 488 >02_04_0515 + 23582105-23583519,23583613-23583741,23583835-23583970, 23584051-23584139,23584236-23584347,23584427-23584533, 23584630-23584723 Length = 693 Score = 27.9 bits (59), Expect = 8.1 Identities = 9/27 (33%), Positives = 20/27 (74%) Frame = +1 Query: 355 ARSEEQCVPLSYIEELHRLHEDWLINR 435 ++SE +C+ L +E + LH++W+++R Sbjct: 446 SQSEVKCLMLQLLEGVKYLHDNWVLHR 472 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,365,449 Number of Sequences: 37544 Number of extensions: 342010 Number of successful extensions: 742 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 742 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1780264028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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