Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0117
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_30744| Best HMM Match : UCH (HMM E-Value=0.22) 29 4.8
SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 29 4.8
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 4.8
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 28 6.3
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 28 6.3
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.3
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +1
Query: 256 WFXFIQHNIPIDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDWLINR 435
WF +I DLI+YL+T+P +RIK+R RSEE V + ++ELH HE WLI +
Sbjct: 83 WFTWITEKEQPQLDLIIYLRTTPEKCMERIKQRCRSEETSVSMDLLKELHDRHEAWLIEK 142
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 510 KRSEHQILRKAVNVVMSSPNKHSPKKP 590
++ +H++L KAV + ++P K P KP
Sbjct: 454 RKMKHRVLEKAVEQIKANPRKPKPAKP 480
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 302 IKSASMGMLCWMXXNHHQELQTVLDGVYYFSSCVQRSSISH*IMIAPLALL-ELEQVSGA 126
++SA +G++C ++ + Q + D + S+C+ H + P+ + E + SGA
Sbjct: 466 LQSAPVGLVCSSVVDNRAKSQEIYDVSFQSSTCISLIDEDHVNVTTPMEMAEEKDSPSGA 525
Query: 125 CPTSSRK 105
S+ K
Sbjct: 526 IVQSASK 532
>SB_30744| Best HMM Match : UCH (HMM E-Value=0.22)
Length = 533
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 238 LCWMECIISHHVFNEAV 188
LCW++C++S VFN+++
Sbjct: 150 LCWLDCVLSLLVFNKSI 166
>SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = -2
Query: 248 ELQTVLDGVYYFSSCVQR-SSISH*IMIAPLALLELEQVSGACPTSSRKRMTGMF 87
E ++V D ++YF++CVQR S+++ +A + +L+QV+ KR+ G++
Sbjct: 5 EYESVGDNLFYFNNCVQRLLSVTNKYHLA-VGRQDLDQVAERIGGVYEKRIGGVY 58
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 224 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVPTTYDW 263
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 184 IVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 223
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 419 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 458
>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 54 LMYKDPEKWGDEHSSHTFP*RCW 122
L+Y DPE++ E S+ TFP W
Sbjct: 118 LVYTDPEEFAPEGSNQTFPDSWW 140
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 282 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 321
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 260 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 299
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 102 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 141
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 102 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 141
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 213 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDW 94
+++ + A+NN S G +G C + +V TYDW
Sbjct: 136 VVLSHLNSHTAMNNILSDLQHGFRSGFSCETQLVLTTYDW 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,624,598
Number of Sequences: 59808
Number of extensions: 400118
Number of successful extensions: 926
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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