Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0117
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 507 IKRSEHQILRKAVNVVMSSPNKHSPKKPISTTPIKITP 620
           +K +  +I+ K V+   SS +    KKP   TP+K+TP
Sbjct: 389 VKPTPVKIVAKKVD--SSSDSSDDEKKPTKATPVKVTP 424


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 507 IKRSEHQILRKAVNVVMSSPNKHSPKKPISTTPIKITP 620
           +K +  +I+ K V+   SS +    KKP   TP+K+TP
Sbjct: 664 VKPTPVKIVAKKVD--SSSDSSDDEKKPTKATPVKVTP 699


>Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical
           protein F17C11.11 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 319 SPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDW---LINRIH 441
           SP I+Y   KKR    E  + L  ++   +L++ W   LI R++
Sbjct: 61  SPFIMYSLNKKRRWEAEDAIGLELLDRAQKLNDGWKVLLIERVN 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,975
Number of Sequences: 27780
Number of extensions: 310830
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)