Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0117
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   8.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 315 DITFNSVPKNQKESSFRRAVCA 380
           DI +   P+N K +S   A+CA
Sbjct: 173 DINYVEYPQNSKRNSEESAICA 194


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 253 IKNCKLCWMECIISHHVFNEAV 188
           IKN  + W +CI+S   +N  V
Sbjct: 104 IKNYNIDWDKCILSSESYNPQV 125


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 89  FIAPFFR--IFVHEFQKIATFKISPHF 15
           +++  FR  + +++F K ++F+I  HF
Sbjct: 326 YVSDVFRYGLLIYDFFKDSSFRIQHHF 352


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 201 STKQYLALNNDRSISFTGVGAGLRCMSNIVKETYD 97
           +TKQ     N + +S        + + NI KE YD
Sbjct: 541 ATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYD 575


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 107 SLTMLDMHRRPAPT 148
           S  M++ HR+PAPT
Sbjct: 90  SENMINDHRQPAPT 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,739
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)