Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0117
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    51   6e-07
At1g67580.1 68414.m07699 protein kinase family protein contains ...    30   1.3  
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    30   1.7  
At2g35920.1 68415.m04409 helicase domain-containing protein simi...    28   5.1  
At3g15080.1 68416.m01907 exonuclease family protein contains exo...    27   9.0  

>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 256 WFXFIQHNIP-IDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDWLI 429
           WF  +  ++P +  D  +YL+ SP   ++R+  R R+EE  V L Y+++LH  HE WL+
Sbjct: 388 WFDPVVSSLPGLVPDGFIYLRASPDTCHKRMMLRKRAEEGGVSLKYLQDLHEKHESWLL 446


>At1g67580.1 68414.m07699 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 752

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 307 YLKTSPSIVYQRIKKR-ARSEEQCVPLSYIEELHRLHEDWLINR 435
           Y++     + + +K+R ++SE +C+ L  +E +  LH++W+++R
Sbjct: 486 YMEHDLKALMETMKQRFSQSEVKCLMLQLLEGVKYLHDNWVLHR 529


>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
            identical to SP|Q42510; contains Pfam profile PF01369:
            Sec7 domain
          Length = 1451

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +2

Query: 17   NVARS*RLQSFGTHVQRSGKMGR*TFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCF 196
            N   S  LQS GT  + SG MGR  F   +SL   +   +P    +   +R+L + + C 
Sbjct: 933  NSLSSAHLQSMGTPRRSSGLMGR--FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCH 990

Query: 197  VEHMMRNNTLHPAQ 238
            ++ +   +    A+
Sbjct: 991  IDSIFTESKFLQAE 1004


>At2g35920.1 68415.m04409 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579; contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain
          Length = 995

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 520 SLLLIHRLSERGLNQHLTLILVRDI 446
           S LL+  + ERG+N+   LI++RD+
Sbjct: 347 SHLLVDEIHERGMNEDFLLIILRDL 371


>At3g15080.1 68416.m01907 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 275

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 555 MSSPNKHSPKKPISTTPIKITPHMRIL 635
           MSS  K  PKK I+  P+++ P+  +L
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLL 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,764
Number of Sequences: 28952
Number of extensions: 282827
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)