Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0116
         (611 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit bet...    33   7.1  

>UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit beta;
           n=1; Bigelowiella natans|Rep: DNA-directed RNA
           polymerase subunit beta - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 1099

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 16  RKSSEFFNPLNTNFNQQILNSGEIQRITSYNNFF*ELRLQYY 141
           +  S  FN L  N    + NS E  +IT+Y ++  E ++QYY
Sbjct: 606 KSKSRNFNRLKYNLKDLLTNSKESLKITNYMSYVREQKIQYY 647


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,406,050
Number of Sequences: 1657284
Number of extensions: 6110816
Number of successful extensions: 10108
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10106
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)