Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0113
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.048
UniRef50_UPI0000498694 Cluster: sua5 superfamily protein; n=1; E...    34   2.4  
UniRef50_A6C9S0 Cluster: Exodeoxyribonuclease 7 large subunit; n...    33   4.2  
UniRef50_A6Q7G8 Cluster: Sensor protein; n=1; Sulfurovum sp. NBC...    32   9.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.9 bits (89), Expect = 0.048
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 52  RWMDELIAHLVLSGYWXP 105
           RW+DEL AHLVLSGYW P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175



 Score = 35.1 bits (77), Expect = 1.4
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -3

Query: 486 RWVDELTTHL*LSGYRSP 433
           RWVDELT HL LSGY SP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_UPI0000498694 Cluster: sua5 superfamily protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: sua5 superfamily
           protein - Entamoeba histolytica HM-1:IMSS
          Length = 357

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 379 SQFLQINGCFTFQTETRYCGASPDVIRPVKISII*KYNTEDNDTPIIIH 233
           ++ +Q  G   F TET Y G   DV +P  I+ I K     ND P+I H
Sbjct: 36  AKIIQQGGLVCFPTETVY-GLGADVFQPNAINQIFKVKGRPNDNPLICH 83


>UniRef50_A6C9S0 Cluster: Exodeoxyribonuclease 7 large subunit; n=1;
           Planctomyces maris DSM 8797|Rep: Exodeoxyribonuclease 7
           large subunit - Planctomyces maris DSM 8797
          Length = 409

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
 Frame = -2

Query: 445 LQKPIDIYNVNAAV--QFETRVLRSQFLQINGCFTFQTETRYCGASPDVIRPVKI----S 284
           L +P+D+ +  AA   + + R+ RS    I+    +QTETR+ G++ D + P+K+     
Sbjct: 304 LTRPLDLVHQRAAQVDELDRRLKRSTREIIS---RYQTETRHLGSALDALSPLKVLNRGY 360

Query: 283 II*KYNTEDNDTPIIIHPPISAVK 212
            I +  TED  + + I   IS VK
Sbjct: 361 SITRKETEDEPSTLNIVKSISQVK 384


>UniRef50_A6Q7G8 Cluster: Sensor protein; n=1; Sulfurovum sp.
           NBC37-1|Rep: Sensor protein - Sulfurovum sp. (strain
           NBC37-1)
          Length = 396

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 170 LQRLXLPSN-RNALLLHGRNRRVYDDRCIIIFCVVLLYYTYFY 295
           LQR+ L +N R  L L  RN+  Y  + II+F +VL++  + Y
Sbjct: 103 LQRIILINNDRFKLFLKNRNKPRYPVKRIIVFSIVLMFILFLY 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,883,453
Number of Sequences: 1657284
Number of extensions: 11352279
Number of successful extensions: 23181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23167
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)